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"Non-linear regression with a user-defined function", "concept": [ "regression" ], "topics": [ "tda_freg" ] }, { "page": "tda_freq1", "title": "One- and two-way frequency tables", "concept": [ "descriptive statistics" ], "topics": [ "tda_freq", "tda_freq1", "tda_freq2" ] }, { "page": "tda_frml", "title": "Maximum likelihood for a user-defined transition rate model", "concept": [ "sequence analysis" ], "topics": [ "tda_frml" ] }, { "page": "tda_g", "title": "Run a graph command", "concept": [ "graph analysis" ], "topics": [ "tda_g" ] }, { "page": "tda_g_analyses", "title": "Graph analyses", "concept": [ "graph analysis" ], "topics": [ "tda_g_aggregate", "tda_g_analyses", "tda_g_backward", "tda_g_centred", "tda_g_cliques", "tda_g_compact", "tda_g_components", "tda_g_cutpoints", "tda_g_cycles", "tda_g_dblocks", "tda_g_dcycles", "tda_g_degrees", "tda_g_dot", "tda_g_edges", "tda_g_eigen", "tda_g_flow", "tda_g_flowcontrol", "tda_g_gcliques", "tda_g_independent", "tda_g_links", "tda_g_mst", "tda_g_neighbourhoods", "tda_g_nodes", "tda_g_ownership", "tda_g_paths", "tda_g_random", "tda_g_reachable", "tda_g_shortest", "tda_g_spanning", "tda_g_spantrees", "tda_g_symmetric", "tda_g_toposort", "tda_g_transitive" ] }, { "page": "tda_gap", "title": "The assignment problem", "topics": [ "tda_gap" ] }, { "page": "tda_gap_permute", "title": "Column permutations toward graph agreement", "topics": [ "tda_gap_permute" ] }, { "page": "tda_gde", "title": "Undirected graph from node lists", "topics": [ "tda_gde" ] }, { "page": "tda_gdf", "title": "General distribution functions for censored data", "concept": [ "regression" ], "topics": [ "tda_gdf" ] }, { "page": "tda_gdu", "title": "Union of two graphs", "topics": [ "tda_gdu" ] }, { "page": "tda_gfcf", "title": "Forward control flows in a directed graph", "topics": [ "tda_gfcf" ] }, { "page": "tda_ghd", "title": "Hasse diagram of multivariate patterns", "topics": [ "tda_ghd" ] }, { "page": "tda_gpro", "title": "Projection of proximities", "topics": [ "tda_gpro" ] }, { "page": "tda_gqap", "title": "Quadratic assignment (GRASP)", "topics": [ "tda_gqap" ] }, { "page": "tda_graph", "title": "A graph for TDA's graph commands", "concept": [ "graph analysis" ], "topics": [ "tda_graph" ] }, { "page": "tda_gtopo", "title": "Read a GTOPO30 elevation profile", "topics": [ "tda_gtopo" ] }, { "page": "tda_help", "title": "TDA's manual, and two notes about the session", "concept": [ "TDA infrastructure" ], "topics": [ "tda_help", "tda_memory", "tda_time" ] }, { "page": "tda_icov", "title": "Covariance and correlation of interval-valued variables", "topics": [ "tda_icorr", "tda_icov" ] }, { "page": "tda_idf", "title": "Distribution function of an interval-valued variable", "concept": [ "interval-valued data" ], "topics": [ "tda_iddf", "tda_idf" ] }, { "page": "tda_ilsreg", "title": "Least squares with an interval-valued response", "concept": [ "interval-valued data" ], "topics": [ "tda_ilsreg" ] }, { "page": "tda_imean", "title": "Statistics of an interval-valued variable", "concept": [ "interval-valued data" ], "topics": [ "tda_igini", "tda_imean", "tda_ivariance" ] }, { "page": "tda_imreg", "title": "Conditional means with interval-valued data", "concept": [ "interval-valued data" ], "topics": [ "tda_imreg" ] }, { "page": "tda_independence", "title": "Delta-independence of two integer variables", "concept": [ "descriptive statistics" ], "topics": [ "tda_independence" ] }, { "page": "tda_ineq", "title": "Inequality measures", "concept": [ "descriptive statistics" ], "topics": [ "tda_ineq" ] }, { "page": "tda_inpreg", "title": "Non-parametric regression with interval-valued data", "concept": [ "interval-valued data" ], "topics": [ "tda_inpreg" ] }, { "page": "tda_integrate", "title": "Integrate, minimise, and evaluate a function", "concept": [ "smoothing" ], "topics": [ "tda_evalf", "tda_gmin", "tda_integrate", "tda_minimize", "tda_range" ] }, { "page": "tda_interp", "title": "Interpolate a surface over a grid", "concept": [ "smoothing" ], "topics": [ "tda_interp" ] }, { "page": "tda_interval_wages", "title": "Artificial interval-valued wage data", "topics": [ "tda_interval_wages" ] }, { "page": "tda_isd", "title": "Standard deviation of an interval-valued variable", "topics": [ "tda_isd" ] }, { "page": "tda_isotonic", "title": "Isotonic regression, with or without tie groups", "concept": [ "smoothing" ], "topics": [ "tda_isotonic" ] }, { "page": "tda_ivar", "title": "Variance of an interval-valued variable (TDA's ivar)", "topics": [ "tda_ivar" ] }, { "page": "tda_ivar1", "title": "Variance of an interval-valued variable (TDA's ivar1)", "concept": [ "interval-valued data" ], "topics": [ "tda_ivar1" ] }, { "page": "tda_ivreg", "title": "Interval regression: a coefficient identified only up to bounds", "concept": [ "interval-valued data" ], "topics": [ "tda_ivls", "tda_ivreg", "tda_ivreg1", "tda_ivreg2" ] }, { "page": "tda_l1reg", "title": "Least absolute deviations regression", "concept": [ "regression" ], "topics": [ "tda_l1reg" ] }, { "page": "tda_locate_line", "title": "One-dimensional multifacility location", "concept": [ "graph analysis" ], "topics": [ "tda_locate_line" ] }, { "page": "tda_loglin", "title": "Log-linear models of a contingency table", "concept": [ "descriptive statistics" ], "topics": [ "coef.tda_loglin", "print.tda_loglin", "residuals.tda_loglin", "tda_loglin", "vcov.tda_loglin" ] }, { "page": "tda_lsreg", "title": "Least squares regression", "concept": [ "regression" ], "topics": [ "tda_lsreg", "tda_lsreg1" ] }, { "page": "tda_mag", "title": "Aggregating a matrix by row and column groups", "concept": [ "matrix reshaping" ], "topics": [ "tda_mag" ] }, { "page": "tda_manual_map", "title": "Where the manual's remaining commands live in R", "topics": [ "manual_map", "tda_manual_map" ] }, { "page": "tda_map", "title": "Maps", "concept": [ "spatial analysis" ], "topics": [ "tda_map" ] }, { "page": "tda_mat", "title": "Matrix operations", "concept": [ "smoothing" ], "topics": [ "tda_mat" ] }, { "page": "tda_mcath", "title": "Concatenating matrices", "concept": [ "matrix reshaping" ], "topics": [ "tda_mcath", "tda_mcathv", "tda_mcatv" ] }, { "page": "tda_mcel", "title": "Build an edge list from an adjacency-style matrix", "concept": [ "matrix algebra" ], "topics": [ "tda_mcel" ] }, { "page": "tda_mcent", "title": "Centering, standardizing, and double-centering", "concept": [ "matrix algebra" ], "topics": [ "tda_mcent", "tda_mdcent", "tda_mstand" ] }, { "page": "tda_mch", "title": "Check an ordering against row/column dominance", "concept": [ "matrix algebra" ], "topics": [ "tda_mch" ] }, { "page": "tda_mcross", "title": "Cross-product and an arithmetic sequence as a column", "concept": [ "matrix algebra" ], "topics": [ "tda_mcross", "tda_mnum" ] }, { "page": "tda_mcvec", "title": "Vectorizing a matrix and its inverse", "concept": [ "matrix reshaping" ], "topics": [ "tda_mcvec", "tda_mivec", "tda_mrvec" ] }, { "page": "tda_mdefg", "title": "Adjacency matrix of a graph", "topics": [ "tda_mdefg" ] }, { "page": "tda_mdiag", "title": "Diagonal construction and extraction", "concept": [ "matrix algebra" ], "topics": [ "tda_mdiag", "tda_mdiagd" ] }, { "page": "tda_mds", "title": "Multidimensional scaling", "concept": [ "clustering" ], "topics": [ "TDA_MDS", "tda_mds" ] }, { "page": "tda_mdsn", "title": "Nonmetric multidimensional scaling", "topics": [ "tda_mdsn" ] }, { "page": "tda_mdsr", "title": "Axes in an MDS configuration", "topics": [ "tda_mdsr" ] }, { "page": "tda_mev", "title": "Eigen decomposition of a general (possibly non-symmetric) matrix", "concept": [ "matrix algebra" ], "topics": [ "tda_mev" ] }, { "page": "tda_mevs", "title": "Eigen decomposition of a symmetric matrix", "concept": [ "matrix algebra" ], "topics": [ "tda_mevs" ] }, { "page": "tda_midf", "title": "Distribution function bounds and estimate for interval-censored data", "concept": [ "matrix algebra" ], "topics": [ "tda_midf" ] }, { "page": "tda_midf1", "title": "Uniform-model CDF for interval-censored data, at each observation", "concept": [ "matrix algebra" ], "topics": [ "tda_midf1" ] }, { "page": "tda_midf2", "title": "Restricted mean for interval-censored data, at each observation", "concept": [ "matrix algebra" ], "topics": [ "tda_midf2" ] }, { "page": "tda_midf3", "title": "Average nearby endpoints for interval-censored data", "concept": [ "matrix algebra" ], "topics": [ "tda_midf3" ] }, { "page": "tda_minvs", "title": "Matrix inversion", "concept": [ "matrix algebra" ], "topics": [ "tda_mginv", "tda_minvd", "tda_minvs" ] }, { "page": "tda_mkmet", "title": "Kemeny distance between rankings", "concept": [ "matrix algebra" ], "topics": [ "tda_mkmet" ] }, { "page": "tda_mkp", "title": "Kronecker product", "concept": [ "matrix algebra" ], "topics": [ "tda_mkp" ] }, { "page": "tda_mlp", "title": "Linear programming", "concept": [ "optimization" ], "topics": [ "tda_mlp", "tda_mlp1" ] }, { "page": "tda_mlpi", "title": "0-1 linear programming", "concept": [ "optimization" ], "topics": [ "tda_mlpi" ] }, { "page": "tda_mlrc_design", "title": "Design matrix for MLRC models", "concept": [ "regression" ], "topics": [ "tda_mlrc_design" ] }, { "page": "tda_mls", "title": "Constrained least squares", "concept": [ "optimization" ], "topics": [ "tda_mls", "tda_mlse", "tda_mlsei", "tda_mlsei1", "tda_mlsi", "tda_mnls" ] }, { "page": "tda_mmul", "title": "Matrix multiplication, transposition, Cholesky decomposition", "concept": [ "matrix algebra" ], "topics": [ "tda_mchol", "tda_mmul", "tda_mtransp" ] }, { "page": "tda_mnc", "title": "Zero out matrix elements by a threshold test", "concept": [ "matrix algebra" ], "topics": [ "tda_mnc" ] }, { "page": "tda_mnrow", "title": "Matrix size and norms", "concept": [ "matrix algebra" ], "topics": [ "tda_mncol", "tda_mnorm", "tda_mnorm1", "tda_mnorm2", "tda_mnrow", "tda_mtrace" ] }, { "page": "tda_mpbl", "title": "Permute to block triangular form", "concept": [ "matrix algebra" ], "topics": [ "tda_mpbl", "tda_mpbu" ] }, { "page": "tda_mpfit", "title": "Iterative proportional fitting", "concept": [ "matrix algebra" ], "topics": [ "tda_mpfit" ] }, { "page": "tda_mpinv", "title": "Invert a permutation", "concept": [ "matrix algebra" ], "topics": [ "tda_mpinv" ] }, { "page": "tda_mpit", "title": "Iterate a Leslie matrix", "concept": [ "matrix algebra" ], "topics": [ "tda_mpit", "tda_mpit1" ] }, { "page": "tda_mple", "title": "Product-limit (Kaplan-Meier) distribution and jumps", "concept": [ "matrix algebra" ], "topics": [ "tda_mple" ] }, { "page": "tda_mproc", "title": "Procrustes rotation", "topics": [ "tda_mproc" ] }, { "page": "tda_mpz", "title": "Permute rows for a zero-free diagonal", "concept": [ "matrix algebra" ], "topics": [ "tda_mpz" ] }, { "page": "tda_mqap", "title": "Quadratic assignment problem", "concept": [ "optimization" ], "topics": [ "tda_mqap" ] }, { "page": "tda_mqp", "title": "Quadratic programming", "concept": [ "optimization" ], "topics": [ "tda_mqp", "tda_mqpb", "tda_mqpc" ] }, { "page": "tda_mreg", "title": "Monotone regression", "concept": [ "regression" ], "topics": [ "tda_mreg" ] }, { "page": "tda_mrsum", "title": "Row and column sums, as vectors or diagonal matrices", "concept": [ "matrix reshaping" ], "topics": [ "tda_mcsum", "tda_mdcol", "tda_mdrow", "tda_mrsum" ] }, { "page": "tda_mscal1", "title": "Scale a matrix by its total sum", "concept": [ "matrix algebra" ], "topics": [ "tda_mscal1" ] }, { "page": "tda_msort", "title": "Sort or rank the rows of a matrix", "concept": [ "matrix reshaping" ], "topics": [ "tda_mrank", "tda_msort", "tda_msort1" ] }, { "page": "tda_msqrtd", "title": "Diagonal square root and its reciprocal", "concept": [ "matrix algebra" ], "topics": [ "tda_msqrtd", "tda_msqrti" ] }, { "page": "tda_msrow", "title": "Selecting or permuting rows and columns", "concept": [ "matrix reshaping" ], "topics": [ "tda_mpcol", "tda_mprow", "tda_mpsym", "tda_mscol", "tda_msrow" ] }, { "page": "tda_msvd", "title": "Singular value decomposition", "concept": [ "matrix algebra" ], "topics": [ "tda_msvd", "tda_msvd1" ] }, { "page": "tda_mtrim", "title": "Trim or pad a matrix's edges", "concept": [ "matrix reshaping" ], "topics": [ "tda_mtrim" ] }, { "page": "tda_mwvec", "title": "Weighted mean of the later elements", "concept": [ "matrix algebra" ], "topics": [ "tda_mwvec", "tda_mwvec1" ] }, { "page": "tda_ndvar", "title": "Dummy variables", "topics": [ "tda_ndvar" ] }, { "page": "tda_niset", "title": "Numerical-integration settings", "topics": [ "tda_niset" ] }, { "page": "tda_npreg", "title": "Non-parametric regression", "concept": [ "regression" ], "topics": [ "tda_npreg" ] }, { "page": "tda_options", "title": "TDA options not exposed as named arguments", "concept": [ "utilities" ], "topics": [ "tda_options" ] }, { "page": "tda_estimates", "title": "Estimates and raw output", "concept": [ "TDA infrastructure" ], "topics": [ "tda_estimates", "tda_output" ] }, { "page": "tda_output_audit", "title": "Account for every line of a run's printed output", "topics": [ "tda_output_audit" ] }, { "page": "tda_payload", "title": "Extract a command's result section from TDA output", "topics": [ "tda_payload" ] }, { "page": "tda_pcyc", "title": "Cycle structure of permutations", "topics": [ "tda_pcyc" ] }, { "page": "tda_pdatd", "title": "Distance matrix from raw variables", "concept": [ "clustering" ], "topics": [ "tda_pdatd" ] }, { "page": "tda_pdatr", "title": "Print all case pairs", "topics": [ "tda_pdatr" ] }, { "page": "tda_pl", "title": "Add a command to a plot", "concept": [ "plotting" ], "topics": [ "TDA_LTY", "tda_pl", "tda_pl_axes", "tda_pl_circle", "tda_pl_frame", "tda_pl_function", "tda_pl_grid", "tda_pl_lines", "tda_pl_points", "tda_pl_polyline", "tda_pl_rect", "tda_pl_smooth", "tda_pl_text", "tda_ps_file" ] }, { "page": "tda_pl_arc", "title": "Curved arcs", "concept": [ "plotting" ], "topics": [ "tda_pl_arc" ] }, { "page": "tda_pl_axis", "title": "Draw a single axis, optionally at an explicit position", "concept": [ "plotting" ], "topics": [ "tda_pl_axis" ] }, { "page": "tda_pl_graph", "title": "Draw a graph with explicit node positions", "concept": [ "plotting" ], "topics": [ "tda_pl_graph" ] }, { "page": "tda_pl_hist", "title": "Further plot commands", "concept": [ "plotting" ], "topics": [ "tda_pl_contour", "tda_pl_curve", "tda_pl_density", "tda_pl_ellipse", "tda_pl_grid_lines", "tda_pl_hist", "tda_pl_histogram", "tda_pl_labels" ] }, { "page": "tda_pl_panel", "title": "Start a new panel within the same session", "concept": [ "plotting" ], "topics": [ "tda_pl_panel" ] }, { "page": "tda_pl_regression", "title": "Add a fitted regression curve or convex hulls to a plot", "concept": [ "plotting" ], "topics": [ "tda_pl_hull", "tda_pl_regression" ] }, { "page": "tda_pl_scatter", "title": "Scatterplots, sunflower plots, and lowess smoothing", "concept": [ "plotting" ], "topics": [ "tda_pl_scatter" ] }, { "page": "tda_plcirc3", "title": "Circle in a 3-d plot", "topics": [ "tda_plcirc3" ] }, { "page": "tda_plglob3", "title": "Globe in a 3-d plot", "topics": [ "tda_plglob3" ] }, { "page": "tda_plot_ps", "title": "Draw TDA's PostScript output with grid", "concept": [ "plotting" ], "topics": [ "tda_plot_ps" ] }, { "page": "tda_plotcm", "title": "Contour plot of a matrix", "topics": [ "tda_plotcm" ] }, { "page": "tda_plotr", "title": "Grey-scale relief of a matrix", "topics": [ "tda_plotr" ] }, { "page": "tda_plotsp", "title": "Akima-smoothed curve through points", "topics": [ "tda_plotsp" ] }, { "page": "tda_plsurf3", "title": "Parametric surface in a 3-d plot", "topics": [ "tda_plsurf3" ] }, { "page": "tda_polygons", "title": "Build polygons from line segments", "concept": [ "spatial analysis" ], "topics": [ "tda_polygons" ] }, { "page": "tda_ps", "title": "A TDA plot", "concept": [ "plotting" ], "topics": [ "tda_ps" ] }, { "page": "tda_ps_objects", "title": "What is inside a TDA PostScript file", "topics": [ "tda_ps_objects" ] }, { "page": "tda_ps3", "title": "Three-dimensional plots", "concept": [ "plotting" ], "topics": [ "tda_pl_curve3", "tda_pl_lines3", "tda_pl_points3", "tda_pl_surface3", "tda_pl_text3", "tda_ps3" ] }, { "page": "tda_ptree", "title": "Print a tree's data structure", "concept": [ "graph analysis" ], "topics": [ "tda_ptree" ] }, { "page": "tda_qreg", "title": "Qualitative response models", "concept": [ "regression" ], "topics": [ "tda_qreg", "TDA_QRMODELS" ] }, { "page": "tda_quant", "title": "Quantiles, histograms and one-way frequency tables", "concept": [ "descriptive statistics" ], "topics": [ "tda_atab", "tda_quant" ] }, { "page": "tda_rank_orders", "title": "All rank orders of a given size", "topics": [ "tda_rank_orders" ] }, { "page": "tda_rap", "title": "Rates in age-period form", "topics": [ "tda_rap" ] }, { "page": "tda_rates", "title": "The estimated rate as a single table", "concept": [ "rate models" ], "topics": [ "tda_rates" ] }, { "page": "tda_rcorr", "title": "Rank correlation matrix", "concept": [ "descriptive statistics" ], "topics": [ "tda_rcorr" ] }, { "page": "tda_rcsv", "title": "Read a CSV file through TDA", "topics": [ "tda_rcsv" ] }, { "page": "tda_rd", "title": "Random values, as TDA's 'rd()'/'rdn()'", "topics": [ "tda_rd", "tda_rdn" ] }, { "page": "tda_read_dbf", "title": "Read a dBase (.dbf) attribute table", "concept": [ "spatial analysis" ], "topics": [ "tda_read_dbf" ] }, { "page": "tda_read_ps", "title": "Read TDA's PostScript output", "concept": [ "plotting" ], "topics": [ "tda_read_ps" ] }, { "page": "tda_read_shapefile", "title": "Read a shapefile into a TDA spatial structure", "concept": [ "spatial analysis" ], "topics": [ "tda_read_shapefile" ] }, { "page": "tda_read_spatial", "title": "Read other spatial formats", "concept": [ "spatial analysis" ], "topics": [ "tda_read_dcw", "tda_read_e00", "tda_read_gshhs", "tda_read_spatial" ] }, { "page": "tda_read_spss", "title": "Read an SPSS data file", "concept": [ "data" ], "topics": [ "tda_read_spss" ] }, { "page": "tda_read_stata", "title": "Read a Stata file", "topics": [ "tda_read_stata" ] }, { "page": "tda_read_sys", "title": "Read a TDA system file", "topics": [ "tda_read_sys" ] }, { "page": "tda_read_table", "title": "Read TDA's output files", "concept": [ "TDA infrastructure" ], "topics": [ "tda_blocks", "tda_file", "tda_read_blocks", "tda_read_table" ] }, { "page": "tda_read_ucinet", "title": "Read a UCINET file", "topics": [ "tda_read_ucinet" ] }, { "page": "tda_read_xls", "title": "Read an Excel .xls workbook", "concept": [ "data" ], "topics": [ "tda_read_xls" ] }, { "page": "tda_recode", "title": "Recode variables in place", "topics": [ "tda_recode" ] }, { "page": "tda_repsel", "title": "Repeat or select block cases", "topics": [ "tda_repsel" ] }, { "page": "tda_rfit", "title": "Fit binary relations to a valued graph", "topics": [ "tda_rfit" ] }, { "page": "tda_rmod", "title": "Simple Rasch model", "topics": [ "tda_rmod" ] }, { "page": "tda_rng", "title": "TDA's random number generator", "topics": [ "tda_rng", "tda_rnorm", "tda_runif" ] }, { "page": "tda_rod", "title": "Rank-order data utilities", "topics": [ "tda_rod" ] }, { "page": "tda_rplz", "title": "Read a PLZ-style CSV file", "topics": [ "tda_rplz" ] }, { "page": "tda_rrdat", "title": "The job-episode data from Blossfeld and Rohwer", "topics": [ "tda_rrdat" ] }, { "page": "tda_rsys", "title": "Read a TDA system file", "topics": [ "tda_rsys" ] }, { "page": "tda_run", "title": "Run TDA commands", "concept": [ "TDA infrastructure" ], "topics": [ "tda_run", "tda_run_cf" ] }, { "page": "tda_scla", "title": "Separable clusters of a valued graph", "topics": [ "tda_scla" ] }, { "page": "tda_sd", "title": "Run a spatial command", "concept": [ "spatial analysis" ], "topics": [ "tda_sd" ] }, { "page": "tda_sd_analyses", "title": "Spatial analyses", "concept": [ "spatial analysis" ], "topics": [ "tda_sd_analyses", "tda_sd_clip", "tda_sd_data", "tda_sd_enclosing", "tda_sd_info", "tda_sd_intersect", "tda_sd_lines", "tda_sd_neighbours", "tda_sd_points", "tda_sd_relations", "tda_sd_select", "tda_sd_voronoi" ] }, { "page": "tda_sd_ps3", "title": "Three-dimensional spatial plots", "concept": [ "spatial analysis" ], "topics": [ "tda_sd_pl3", "tda_sd_pl3_lines", "tda_sd_pl3_points", "tda_sd_pl3_polygons", "tda_sd_plot3", "tda_sd_plot3_lines", "tda_sd_plot3_polygons", "tda_sd_ps3" ] }, { "page": "tda_sddf", "title": "Distribution function of a set-valued discrete variable", "concept": [ "interval-valued data" ], "topics": [ "tda_sddf" ] }, { "page": "tda_segr", "title": "Segregation measures between two groups", "concept": [ "descriptive statistics" ], "topics": [ "tda_segr" ] }, { "page": "tda_seq_info", "title": "Information about currently defined sequence data structures", "concept": [ "sequence analysis" ], "topics": [ "tda_seq_info" ] }, { "page": "tda_seqgc", "title": "Sequence characteristics, lengths, gaps and state 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